#!/bin/bash
#$ -cwd
#$ -l mem=6G
#$ -M nealsid@gmail.com
#$ -m e
echo BARD1
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 215593275 215674428 10 2
echo MSH6
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 48010221 48034092 10 2 
echo RAD50
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 131892616 131980313 10 5 
echo NBN
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 90945564 90996899 10 8 
echo MRE11A
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 94150469 94227040 10 11
echo BRCA2
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 32889617 32973809 10 13
echo PALB2
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 23614483 23652678 10 16
echo RAD51C
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 56769963 56811692 10 17
echo BRIP1
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 59756547 59940920 10 17
echo TP53
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 7571720 7590863 10 17
echo BRCA1
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 41196311 41277499 10 17
echo CHEK2
./snp-pdf ./TCGA_exome_BI_101-195_b37.vcf.screened.annotated.vcf 29083731 29137822 10 22
